{ "_id": "6a1ef388b401979e734153b5", "Package": "MGLM", "Version": "0.2.1", "Title": "Multivariate Response Generalized Linear Models", "Author": "Yiwen Zhang and Hua Zhou\n", "Maintainer": "Juhyun Kim ", "Description": "Provides functions that (1) fit multivariate discrete\ndistributions, (2) generate random numbers from multivariate\ndiscrete distributions, and (3) run regression and penalized\nregression on the multivariate categorical response data.\nImplemented models include: multinomial logit model, Dirichlet\nmultinomial model, generalized Dirichlet multinomial model, and\nnegative multinomial model. Making the best of the\nminorization-maximization (MM) algorithm and Newton-Raphson\nmethod, we derive and implement stable and efficient algorithms\nto find the maximum likelihood estimates. On a multi-core\nmachine, multi-threading is supported.", "VignetteBuilder": "knitr", "LazyLoad": "yes", "LazyData": "yes", "License": "GPL (>= 2)", "RoxygenNote": "7.1.2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-19 07:30:57 UTC", "User": "root" }, "Repository": "https://juhyun-kim-ucla.r-universe.dev", "Date/Publication": "2022-04-13 22:32:32 UTC", "RemoteUrl": "https://github.com/cran/MGLM", "RemoteRef": "HEAD", "RemoteSha": "e0b8d5d6dec9b3b0dcc74514b0b68438276513d4", "MD5sum": "25babc5ecb4167e900997e5dc33eb877", "_user": "juhyun-kim-ucla", "_type": "src", "_file": "MGLM_0.2.1.tar.gz", "_fileid": "d7f1c2653e67cb35b6c9c75095ff833293b501b31b0ca1efc0e9ded72de57172", "_filesize": 377127, "_sha256": "d7f1c2653e67cb35b6c9c75095ff833293b501b31b0ca1efc0e9ded72de57172", "_created": "2026-05-19T07:30:57.000Z", "_published": "2026-06-02T15:15:20.705Z", "_distro": "noble", "_jobs": [ { "job": 79105064700, "time": 159, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7077458422" }, { "job": 79105063655, "time": 125, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7077447598" }, { "job": 79105064131, "time": 157, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7077447424" }, { "job": 79105063239, "time": 188, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7077456771" }, { "job": 79105062697, "time": 187, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7077407492" }, { "job": 79105062646, "time": 120, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7361879519" }, { "job": 79105063609, "time": 111, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7077443011" }, { "job": 79105063696, "time": 131, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7077450339" }, { "job": 79105063554, "time": 96, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7077438446" } ], "_buildurl": "https://github.com/r-universe/juhyun-kim-ucla/actions/runs/26082819727", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/MGLM", "_commit": { "id": "e0b8d5d6dec9b3b0dcc74514b0b68438276513d4", "author": "Juhyun Kim ", "committer": "cran-robot ", "message": "version 0.2.1\n", "time": 1649889152 }, "_maintainer": { "name": "Juhyun Kim", "email": "juhkim111@ucla.edu", "login": "juhyun-kim-ucla", "description": "\n", "uuid": 26255646 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.0", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "stats4", "role": "Imports" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "plyr", "role": "Suggests" }, { "package": "reshape2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 4, "_contributors": [ { "user": "juhyun-kim-ucla", "count": 4, "uuid": 26255646 } ], "_userbio": { "uuid": 26255646, "type": "user", "name": "Juhyun Kim " }, "_downloads": { "count": 569, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MGLM" }, "_mentions": 7, "_searchresults": 106, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/MGLM.html", "manual.pdf" ], "_realowner": "juhyun-kim-ucla", "_cranurl": false, "_releases": [ { "version": "0.0.1", "date": "2013-09-25" }, { "version": "0.0.2", "date": "2013-11-07" }, { "version": "0.0.3", "date": "2014-01-05" }, { "version": "0.0.4", "date": "2014-02-23" }, { "version": "0.0.5", "date": "2014-04-25" }, { "version": "0.0.6", "date": "2014-04-27" }, { "version": "0.0.7", "date": "2016-02-17" }, { "version": "0.0.8", "date": "2017-03-27" }, { "version": "0.0.9", "date": "2018-01-14" }, { "version": "0.1.0", "date": "2018-01-21" }, { "version": "0.2.0", "date": "2018-10-19" }, { "version": "0.2.1", "date": "2022-04-14" } ], "_exports": [ "AIC", "BIC", "coef", "ddirm", "ddirmn", "dgdirm", "dgdirmn", "dmn", "dmultn", "dneg", "dnegmn", "dof", "kr", "logLik", "maxlambda", "MGLMfit", "MGLMreg", "MGLMreg.fit", "MGLMsparsereg", "MGLMsparsereg.fit", "MGLMtune", "path", "predict", "rdirm", "rdirmn", "rgdirm", "rgdirmn", "rmn", "rnegmn", "show" ], "_datasets": [ { "name": "rnaseq", "title": "RNA-seq count data", "object": "rnaseq", "class": [ "data.frame" ], "fields": [ "X1", "X2", "X3", "X4", "X5", "X6", "totalReads", "treatment", "gender", "age" ], "rows": 200, "table": true, "tojson": true } ], "_help": [ { "page": "MGLM-package", "title": "MGLM: A package for multivariate response generalized linear models", "topics": [ "MGLM-package" ] }, { "page": "AIC", "title": "Akaike's Information Criterion (AIC)", "topics": [ "AIC", "AIC,MGLMfit-method", "AIC,MGLMreg-method", "AIC,MGLMsparsereg-method", "AIC,MGLMtune-method" ] }, { "page": "BIC", "title": "Bayesian information criterion (BIC)", "topics": [ "BIC", "BIC,MGLMfit-method", "BIC,MGLMreg-method", "BIC,MGLMsparsereg-method", "BIC,MGLMtune-method" ] }, { "page": "coef", "title": "Extract Model Coefficients", "topics": [ "coef", "coef,MGLMfit-method", "coef,MGLMreg-method", "coef,MGLMsparsereg-method", "coef,MGLMtune-method" ] }, { "page": "dist", "title": "Details of the distributions", "topics": [ "dist" ] }, { "page": "MGLMfit", "title": "Fit multivariate discrete distributions", "topics": [ "DMD.DM.fit", "DMD.GDM.fit", "DMD.NegMN.fit", "MGLMfit" ] }, { "page": "dof", "title": "Extract degrees of freedom", "topics": [ "dof", "dof,MGLMsparsereg-method" ] }, { "page": "kr", "title": "Khatri-Rao product of two matrices", "topics": [ "kr" ] }, { "page": "logLik", "title": "Extract log-likelihood", "topics": [ "logLik", "logLik,MGLMfit-method", "logLik,MGLMreg-method", "logLik,MGLMsparsereg-method" ] }, { "page": "maxlambda", "title": "Extract maximum lambda", "topics": [ "maxlambda", "maxlambda,MGLMsparsereg-method" ] }, { "page": "MGLM-deprecated", "title": "Deprecated function(s) in the MGLM package", "topics": [ "ddirm", "dgdirm", "dneg", "MGLM-deprecated", "rdirm", "rgdirm" ] }, { "page": "MGLMfit-class", "title": "Class '\"MGLMfit\"'", "topics": [ "MGLMfit-class" ] }, { "page": "MGLMreg", "title": "Fit multivariate response GLM regression", "topics": [ "MGLMreg", "MGLMreg.fit" ] }, { "page": "MGLMreg-class", "title": "Class '\"MGLMreg\"'", "topics": [ "MGLMreg-class" ] }, { "page": "MGLMsparsereg", "title": "Fit multivariate GLM sparse regression", "topics": [ "MGLMsparsereg", "MGLMsparsereg.fit" ] }, { "page": "MGLMsparsereg-class", "title": "Class '\"MGLMsparsereg\"'", "topics": [ "MGLMsparsereg-class" ] }, { "page": "MGLMtune", "title": "Choose the tuning parameter value in sparse regression", "topics": [ "MGLMtune" ] }, { "page": "MGLMtune-class", "title": "Class '\"MGLMtune\"'", "topics": [ "MGLMtune-class" ] }, { "page": "path", "title": "Extract path", "topics": [ "path", "path,MGLMtune-method" ] }, { "page": "predict", "title": "Predict method for MGLM Fits", "topics": [ "predict", "predict,MGLMreg", "predict,MGLMreg,ANY-method", "predict,MGLMreg-method" ] }, { "page": "dirmn", "title": "The Dirichlet Multinomial Distribution", "topics": [ "ddirmn", "dirmn", "rdirmn" ] }, { "page": "gdirmn", "title": "The Generalized Dirichlet Multinomial Distribution", "topics": [ "dgdirmn", "gdirmn", "rgdirmn" ] }, { "page": "mn", "title": "The Multinomial Distribution", "topics": [ "dmn", "mn", "rmn" ] }, { "page": "rnaseq", "title": "RNA-seq count data", "topics": [ "rnaseq" ] }, { "page": "negmn", "title": "The Negative Multinomial Distribution", "topics": [ "dnegmn", "negmn", "rnegmn" ] }, { "page": "show", "title": "Show an object", "topics": [ "show", "show,MGLMfit-method", "show,MGLMreg-method", "show,MGLMsparsereg-method", "show,MGLMtune-method" ] } ], "_rundeps": [], "_vignettes": [ { "source": "mglm_vignette.rmd", "filename": "mglm_vignette.html", "title": "MGLM Vignette", "author": "Yiwen Zhang and Hua Zhou", "engine": "knitr::knitr", "headings": [ "Distribution fitting", "Multinomial (MN)", "Dirichlet-multinomial (DM)", "Generalized Dirichlet-multinomial (GDM)", "Negative multinomial (NegMN)", "Regression", "Multinomial regression", "Dirichlet-multinomial regression", "Generalized Dirichlet-multinomial Regression", "Negative multinomial regression", "Prediction", "Sparse regression", "Select by entries", "Select by rows", "Select by singular values" ], "created": "2018-01-14 14:31:14", "modified": "2022-04-13 22:32:32", "commits": 3 } ], "_score": 4.949585151326652, "_indexed": true, "_nocasepkg": "mglm", "_universes": [ "juhyun-kim-ucla" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.1", "date": "2026-05-19T07:33:20.000Z", "distro": "noble", "commit": "e0b8d5d6dec9b3b0dcc74514b0b68438276513d4", "fileid": "ac95e6824c61fac0d612ae7e01fd6428ffda44d1d3da687008f62793a4fd24c7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/juhyun-kim-ucla/actions/runs/26082819727" }, { "r": "4.6.0", "os": "linux", "version": "0.2.1", "date": "2026-05-19T07:32:57.000Z", "distro": "noble", "commit": "e0b8d5d6dec9b3b0dcc74514b0b68438276513d4", "fileid": "ec9a404cebaac4be1ba362e0a0792c012fc02cb0207165384d7e0061bafaa9d9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/juhyun-kim-ucla/actions/runs/26082819727" }, { "r": "4.5.3", "os": "mac", "version": "0.2.1", "date": "2026-05-19T07:33:04.000Z", "commit": "e0b8d5d6dec9b3b0dcc74514b0b68438276513d4", "fileid": "bf7c5871707b1a003e095c78165bf1ba37686f1fe57c3318f382553b813ab771", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/juhyun-kim-ucla/actions/runs/26082819727" }, { "r": "4.6.0", "os": "mac", "version": "0.2.1", "date": "2026-05-19T07:33:20.000Z", "commit": "e0b8d5d6dec9b3b0dcc74514b0b68438276513d4", "fileid": "fa8634946dc28d6fd2b2233a065b91e9f8fabdaf5f78fc6eeeb48946d21602da", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/juhyun-kim-ucla/actions/runs/26082819727" }, { "r": "4.7.0", "os": "win", "version": "0.2.1", "date": "2026-05-19T07:32:40.000Z", "commit": "e0b8d5d6dec9b3b0dcc74514b0b68438276513d4", "fileid": "aec98c8157a62f77c73756c37d7022453e68ca23a9aee9ad7c5ff42efa8692da", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/juhyun-kim-ucla/actions/runs/26082819727" }, { "r": "4.5.3", "os": "win", "version": "0.2.1", "date": "2026-05-19T07:32:57.000Z", "commit": "e0b8d5d6dec9b3b0dcc74514b0b68438276513d4", "fileid": "eaf536bdf5026c11eed7a8f321c444f7dd2e676462f6b11e8607d7f0c1a71687", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/juhyun-kim-ucla/actions/runs/26082819727" }, { "r": "4.6.0", "os": "win", "version": "0.2.1", "date": "2026-05-19T07:32:21.000Z", "commit": "e0b8d5d6dec9b3b0dcc74514b0b68438276513d4", "fileid": "e077171039f28e3ee871282fb25aec34eb9b9a4d04df107d295021ea5cfd8379", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/juhyun-kim-ucla/actions/runs/26082819727" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.1", "date": "2026-06-02T15:14:25.000Z", "commit": "e0b8d5d6dec9b3b0dcc74514b0b68438276513d4", "fileid": "5633718102b4ff93d8f4b453428acf3742f6e3159891cb111e4ec0c52df8799d", "status": "success", "buildurl": "https://github.com/r-universe/juhyun-kim-ucla/actions/runs/26082819727" } ] }